• Skip to main content
  • Skip to primary sidebar
AAAI

AAAI

Association for the Advancement of Artificial Intelligence

    • AAAI

      AAAI

      Association for the Advancement of Artificial Intelligence

  • About AAAIAbout AAAI
    • News
    • Officers and Committees
    • Staff
    • Bylaws
    • Awards
      • Fellows Program
      • Classic Paper Award
      • Dissertation Award
      • Distinguished Service Award
      • Allen Newell Award
      • Outstanding Paper Award
      • AI for Humanity Award
      • Feigenbaum Prize
      • Patrick Henry Winston Outstanding Educator Award
      • Engelmore Award
      • AAAI ISEF Awards
      • Senior Member Status
      • Conference Awards
    • Partnerships
    • Resources
    • Mailing Lists
    • Past Presidential Addresses
    • AAAI 2025 Presidential Panel on the Future of AI Research
    • Presidential Panel on Long-Term AI Futures
    • Past Policy Reports
      • The Role of Intelligent Systems in the National Information Infrastructure (1995)
      • A Report to ARPA on Twenty-First Century Intelligent Systems (1994)
    • Logos
  • aaai-icon_ethics-diversity-line-yellowEthics & Diversity
  • Conference talk bubbleConferences & Symposia
    • AAAI Conference
    • AIES AAAI/ACM
    • AIIDE
    • EAAI
    • HCOMP
    • IAAI
    • ICWSM
    • Spring Symposia
    • Summer Symposia
    • Fall Symposia
    • Code of Conduct for Conferences and Events
  • PublicationsPublications
    • AI Magazine
    • Conference Proceedings
    • AAAI Publication Policies & Guidelines
    • Request to Reproduce Copyrighted Materials
    • Contribute
    • Order Proceedings
  • aaai-icon_ai-magazine-line-yellowAI Magazine
  • MembershipMembership
    • Member Login
    • Chapters

  • Career CenterAI Jobs
  • aaai-icon_ai-topics-line-yellowAITopics
  • aaai-icon_contact-line-yellowContact

  • Twitter
  • Facebook
  • LinkedIn
Home / Proceedings / Proceedings Of The Fifth International Conference On Intelligent Systems For Molecular Biology /

Book One

Contents

  • Beta-sheet Prediction Using Interstrand Residue Pairs and Refinement with Hopfield Neural Network

    Minoru Asogawa

    PDF
  • Decision Support sSystem for the Evolutionary Classification of Protein Structures

    Liisa Holm and Chris Sander

    PDF
  • Enumerating and Ranking Discrete Motifs

    Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, and Douglas L. Brutlag

    PDF
  • Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding

    Jonathan Schug and G. Christian Overton

    PDF
  • A CORBA Server for the Radiation Hybrid Database

    P. Rodriguez-Tomé, C. Helgesen, P. Lijnzaad, and K. Jungfer

    PDF
  • Protein Model Representation and Construction

    M. Sullivan, J. Glasgow, E. Steeg, L. Leherte, and S. Fortier

    PDF
  • Functional Prediction of B. subtilis Genes from Their Regulatory Sequences

    Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, and Kenta Nakai

    PDF
  • Novel Techniques for Visualizing Biological Information

    Alan J. Robinson and Tomas P. Flores

    PDF
  • The Context-Dependence of Amino Acid Properties

    Thomas Ioerger

    PDF
  • RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data

    Richard O. Chen, Ramon Feiciano, and Russ B. Altman

    PDF
  • Bayesian Adaptive Alignment and Inference

    Jun Zhu, Jun Liu, and Charles Lawrence

    PDF
  • Code Generation through Annotation of Macromolecular Structure Data

    John Biggs, Calton Pu, and Philip Bourne

    PDF
  • Modeling Antibody Side Chain Conformations Using Heuristic Database Search

    David W. Ritchie and Graham J. L. Kemp

    PDF
  • Domain Identification by Clustering Sequence Alignments

    Xiaojun Guan

    PDF
  • Inference of Molecular Phylogenetic Tree Based on Minimum Model-based Complexity Method

    H. Tanaka, F. Ren, T. Okayama, and T.Gojobori

    PDF
  • Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage

    Lawrence Hunter and Barry Zeeberg

    PDF
  • CarthaGene: Constructing and Joining Maximum Likelihood Genetic Maps

    Thomas Schiex and Christine Gaspin

    PDF
  • Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags

    Ying Xu, Richard J. Mural, and Edward C. Uberbacher

    PDF
  • Application of Genetic Search in Derivation of Matrix Models of Peptide Binding to MHC Molecules

    Vladimir Brusic, Christian Schönbach, Masafumi Takiguchi, Vic Ciesielski, and Leonard C. Harrison

    PDF
  • Adding Semantics to Genome Databases: Towards an Ontology for Molecular Biology

    Steffen Schulze-Kremer

    PDF
  • Better Prediction of Protein Cellular Localization Sites with the k Nearest Neighbors Classifier

    Paul Horton and Kenta Nakai

    PDF
  • Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique

    Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, and Toshihisa Takagi

    PDF
  • Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL

    Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, and Amos Bairoch

    PDF
  • Selecting Optimal Oligonucleotide Primers for Multiplex PCR

    Pierre Nicodeme and Jean-Marc Steyaert

    PDF
  • Automated Alignment of RNA Sequences to Pseudoknotted Structures

    Jack E. Tabaska and Gary D. Stormo

    PDF
  • Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity

    Marie des Jardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, and Christos A. Ouzounis

    PDF
  • Organizing Committee

    Terry Gaasterland, Peter Karp, Kevin Karplus, Ghristos Ouzounis, Chris Sander, and Alfonso Valencia

    PDF
  • Self-Organizing Neural Maps of the Coding Sequences of G-Protein-Coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins.

    P. Arrigo, P. Fariselli, and R. Casadio

    PDF
  • The Gene-Finder Computer Tools for Analysis of Human and Model Organisms Genome Sequences

    Victor Solovyev and Asaf Salamov

    PDF
  • Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data

    Russ B. Altman, Neil F. Abernethy and Richard O. Chen

    PDF
  • Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors

    Inna Dubchak, Ilya Muchnik, and Sung-Hou Kim

    PDF
  • Multi-Body Interactions within the Graph of Protein Structure

    Peter J. Munson and Raj K. Singh

    PDF
  • A New Plug-in Software Architecture Applied for a Portable Molecular Structure Browser

    Yutaka Ueno and Kiyoshi Asai

    PDF
  • RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation

    Henning Hermjakob, Robert Giegerich, and Walter Arnold

    PDF
  • Automatic Construction of Knowledge Base from Biological Papers

    Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, and Toshihisa Takagi

    PDF
  • Sponsors

    Terry Gaasterland, Peter Karp, Kevin Karplus, Ghristos Ouzounis, Chris Sander, and Alfonso Valencia

    PDF
  • A Fast Heuristic Algorithm for a Probe Mapping Problem

    Brendan Mumey

    PDF
  • Incorporating Global Information into Secondary Structure Prediction with Hidden Markov Models of Protein Folds

    Valentina Di Francesco, Philip McQueen, Jean Garnier, and Peter J. Munson

    PDF
  • Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data

    Russ B. Altman, Neil F. Abernethy, and Richard O. Chen

    PDF
  • PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank)

    Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, and Minoru Saito

    PDF
  • ANOLEA: A www Server to Assess Protein Structures

    Francisco Melo, Damien Devos, Eric Depiereux and Ernest Feytmans

    PDF
  • Large Scale Protein Modelling and Model Repository

    Manuel C. Peitsch

    PDF
  • Better Cutters for Protein Mass Fingerprinting: Preliminary Findings

    Michael J. Wise, Tim Littlejohn and Ian Humphery-SmithS

    PDF
  • Finding Common Sequence and Structure Motifs in a set of RNA Sequences

    Jan Gorodkin, Laurie J. Heyer, and Gary D. Stormo

    PDF
  • Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations

    Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Shavlik, and Frederick R. Blattner

    PDF
  • Hierarchical Protein Structure Superposition using both Secondary Structure and Atomic Representations

    Amit Singh and Douglas BrutlagS

    PDF
  • Data Mining for Regulatory Elements in Yeast Genome

    Alvis Brazma, Jaak Vilo, Esko Ukkonen, and Kimmo Valtonen

    PDF
  • Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome Analysis

    Anders Gorm Pedersen and Henrik Nielsen

    PDF
  • SEALS: A System for Easy Analysis of Lots of Sequences

    D. Roland Walker and Eugene V. Koonin

    PDF
  • Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-based Method

    Ina Koch and Thomas Lengauer

    PDF
  • Two Methods for Improving Performance of an HMM and Their Application for Gene Finding

    Anders Krogh

    PDF
  • Predicting Enzyme Function from Sequence: A Systematic Appraisal

    Imran Shah and Lawrence Hunter

    PDF
  • Preface

    The ISMB-97 conference took place in Halkidiki, Greece, from June 21-25, 1997. The conference consisted of one day of tutorials followed by four days of technical presentations, and included a workshop on genome annotation.

    PDF
  • A Knowledge Base for D. melanogaster Gene Interactions Involved in Pattern Formation

    Jérôme Euzenat, Christophe Chemla, and Bernard Jacq

    PDF
  • Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used In Sequence Comparison

    Ewan Birney and Richard Durbin

    PDF
  • Generating Benchmarks for Multiple Sequence Alignments and Phylogenetic Reconstructions

    Jens Stoye, Dirk Evers, and Folker Meyer

    PDF

Primary Sidebar